IssueTracker

Updated to Studio 2.3-beta2 and now we're seeing an issue with Gradle 2.3.0Beta2 and Gradle wrapper 3.3. When we build, its failing to generate some native libraries.  I've traced this back to it generating bogus JSON output for our externalnativebuild. This issue is not there in 2.2.3 & 2.14.1(respectively)

The exported JSON is missing more than half of the source files indicated in my android.mk file, it seems to grab the bottom third of the file and ignores the rest, I will attach a copy of the JSON generated from each.

our project actually has android.mk reference several other .mk files, unsure if this is part of the issue or not, but it has worked up until now.
eg: android.mk contains lines such as:
include Android_proj_A.mk
include Android_proj_B.mk
...

The end result of all this is that several of our .so files are not built, curiously this does not trigger any kind of build failure, and the .apk is built and deployed, without the required .so files.  Our app then crashes spectacularly the moment we attempt to load the native library via System.loadLibrary() in Java due to the lack of said .so files in the apk.

Steps To Reproduce:
Unfortunately I don't have a sample project to provide at this time however the steps to reproduce are fairly straightforward:
1) create a project that uses a Gradle configuration to build with ndkBuild
2) possibly use the reference structure mentioned above in the .mk files
3) perform a gradle sync using gradle 2.3.0Beta2 and Gradle Wrapper 3.3
4) compare the output JSON from the last successful one, in my case it was less than half the size and missing all kinds of information.
5) edit gradle-wrapper.properties to roll back to 2.14.1 and edit build.gradle to roll back to 2.2.3
6) Sync again, the JSON is generated correctly.


Expected Results:
JSON is generated with exact same contents in either case.

Version Information:
Android Studio 2.3 Beta 2
Build #AI-162.3616766, built on January 6, 2017
JRE: 1.8.0_112-release-b06 amd64
JVM: OpenJDK 64-Bit Server VM by JetBrains s.r.o

Windows 10

Gradle Version: 2.3.0-beta2
Android Plugin Version: 3.3
Android SDK tools Versioni 25.2.5
Compile SDK Version: API 23
Build Tools Version: 25.0.2

let me know if I can provide any additional information that may be of assistance.